Transcript: ENST00000331849.4 ACSM5-001

Description

acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:26060]

Gene Synonyms

FLJ20581, MACS3

Location

Chromosome 16: 20,420,856-20,452,658 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 11 domains and features, is associated with 15711 variant alleles and maps to 656 oligo probes.

Gene

This transcript is a product of gene ENSG00000183549.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331849.4	ACSM5-001	2796	579aa	ENSP00000327916.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10585	Q6NUN0	NM_017888.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000575584.1	ACSM5-002	1130	208aa	ENSP00000460112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6NUN0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000573920.1	ACSM5-006	457	112aa	ENSP00000461752.1	Nonsense mediated decay		I3L536	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000575070.1	ACSM5-003	856	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570305.1	ACSM5-004	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577024.1	ACSM5-007	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574748.1	ACSM5-005	480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 2,796 bps, Translation length: 579 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6NUN0

CCDS

This transcript is a member of the Human CCDS set: CCDS10585

Version

ENST00000331849.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254413 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000331849.4 ACSM5-001

Summary