Transcript: ENST00000469361.1 TRAPPC6B-003

Description

trafficking protein particle complex 6B [Source:HGNC Symbol;Acc:23066]

Gene Synonyms

TPC6

Location

About this transcript

This transcript has 5 exons, is associated with 10556 variant alleles and maps to 421 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000330149.5	TRAPPC6B-002	3242	158aa	ENSP00000330289.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41947	B0AZV9 G3V4C3 Q86SZ2	NM_001079537.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347691.5	TRAPPC6B-001	3229	130aa	ENSP00000335171.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9670	G3V4C3 Q86SZ2	NM_177452.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554018.1	TRAPPC6B-006	541	102aa	ENSP00000450670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2H7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000555269.1	TRAPPC6B-007	1000	50aa	ENSP00000452236.1	Nonsense mediated decay		G3V4C3	-	-
ENST00000556765.1	TRAPPC6B-005	664	50aa	ENSP00000451711.1	Nonsense mediated decay		G3V4C3	-	-
ENST00000557764.1	TRAPPC6B-004	870	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469361.1	TRAPPC6B-003	4533	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 4,533 bps,

Version

ENST00000469361.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000331444 (version 1)