Transcript: ENST00000565219.1 SLX1B-003

Description

SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:28748]

Gene Synonyms

GIYD1, GIYD2, MGC5178, SLX1

Location

About this transcript

This transcript has 5 exons, is associated with 359 variant alleles and maps to 679 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000330181.5	SLX1B-001	1165	275aa	ENSP00000328940.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10648	H3BRR6 Q9BQ83	NM_024044.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000351581.4	SLX1B-002	762	161aa	ENSP00000335316.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10649	Q9BQ83	NM_178044.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567248.1	SLX1B-005	400	88aa	ENSP00000456372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BRR6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565219.1	SLX1B-003	1558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566424.1	SLX1B-004	1140	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,558 bps,

Version

ENST00000565219.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000433582 (version 1)