Transcript: ENST00000376315.2 DEFB119-004

Description

defensin, beta 119 [Source:HGNC Symbol;Acc:18099]

Gene Synonyms

DEFB-19, DEFB-20, DEFB120, DEFB19, DEFB20, ESC42-RELA, ESC42-RELB

Location

Chromosome 20: 29,976,771-29,978,286 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 4 domains and features, is associated with 796 variant alleles and maps to 219 oligo probes.

Gene

This transcript is a product of gene ENSG00000180483.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000339144.3	DEFB119-001	484	43aa	ENSP00000345768.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N690	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376321.3	DEFB119-003	457	84aa	ENSP00000365499.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13178	Q8N690	NM_153289.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376315.2	DEFB119-004	324	88aa	ENSP00000365492.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33455	Q5GRG0 Q8N690	NM_153323.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492344.1	DEFB119-002	500	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 324 bps, Translation length: 88 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N690

CCDS

This transcript is a member of the Human CCDS set: CCDS33455

Version

ENST00000376315.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs12329612, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) ESP6500:African_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000078507 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000376315.2 DEFB119-004

Summary