Transcript: ENST00000579249.1 ERN1-006

Description

endoplasmic reticulum to nucleus signaling 1 [Source:HGNC Symbol;Acc:3449]

Gene Synonyms

IRE1, IRE1P, IRE1a, hIRE1p

Location

Chromosome 17: 62,145,220-62,149,456 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1685 variant alleles and maps to 46 oligo probes.

Gene

This transcript is a product of gene ENSG00000178607.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000433197.3	ERN1-001	7876	977aa	ENSP00000401445.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45762	O75460	NM_001433.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000606895.1	ERN1-008	2068	70aa	ENSP00000475519.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75460	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577567.1	ERN1-005	398	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583896.1	ERN1-004	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584041.1	ERN1-003	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000579249.1	ERN1-006	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583028.1	ERN1-002	523	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583077.1	ERN1-007	503	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 548 bps,

Version

ENST00000579249.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000443737 (version 1)

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Transcript: ENST00000579249.1 ERN1-006

Summary