Transcript: ENST00000580095.1 TOP3A-020

Description

topoisomerase (DNA) III alpha [Source:HGNC Symbol;Acc:11992]

Gene Synonyms

TOP3

Location

Chromosome 17: 18,178,118-18,218,017 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 29 domains and features, is associated with 19249 variant alleles and maps to 660 oligo probes.

Gene

This transcript is a product of gene ENSG00000177302.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000321105.5	TOP3A-001	4056	1001aa	ENSP00000321636.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11194	A8K398 B4DSJ0 Q13472	NM_004618.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542570.1	TOP3A-202	3156	906aa	ENSP00000442336.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8K398 B4DK80 B4DSJ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580095.1	TOP3A-020	2929	976aa	ENSP00000462790.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8K398 B4DSJ0 Q13472	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000540524.1	TOP3A-201	1951	531aa	ENSP00000446425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8K398 B4DSJ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489131.1	TOP3A-008	582	25aa	ENSP00000465864.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000584582.1	TOP3A-010	3661	69aa	ENSP00000462136.1	Nonsense mediated decay		J3KRR9	-	-
ENST00000582981.1	TOP3A-009	3239	89aa	ENSP00000462378.1	Nonsense mediated decay		J3KS96	-	-
ENST00000461127.1	TOP3A-004	823	139aa	ENSP00000464338.1	Nonsense mediated decay		J3QR18	-	-
ENST00000581536.1	TOP3A-012	766	163aa	ENSP00000466641.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000585031.1	TOP3A-015	575	95aa	ENSP00000464493.1	Nonsense mediated decay		J3QS25	-	-
ENST00000582122.1	TOP3A-019	553	133aa	ENSP00000466099.1	Nonsense mediated decay		K7ELI7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000493648.1	TOP3A-007	503	52aa	ENSP00000465014.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582230.1	TOP3A-017	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584669.1	TOP3A-011	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584887.1	TOP3A-016	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469739.2	TOP3A-003	3196	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583804.2	TOP3A-013	1465	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472959.1	TOP3A-005	913	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583328.1	TOP3A-018	727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477508.1	TOP3A-006	600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580713.1	TOP3A-014	474	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 2,929 bps, Translation length: 976 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13472

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000580095.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000448451 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000580095.1 TOP3A-020

Summary