Transcript: ENST00000547701.1 CTDSP2-004

Description

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 [Source:HGNC Symbol;Acc:17077]

Gene Synonyms

NIF2, OS4, PSR2, SCP2

Location

Chromosome 12: 58,217,244-58,239,317 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 8 domains and features, is associated with 9805 variant alleles and maps to 255 oligo probes.

Gene

This transcript is a product of gene ENSG00000175215.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000398073.2	CTDSP2-001	4795	271aa	ENSP00000381148.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41801	F8W184 O14595	NM_005730.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548823.1	CTDSP2-003	1368	98aa	ENSP00000447046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1I1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547701.1	CTDSP2-004	988	119aa	ENSP00000446705.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W184	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549039.1	CTDSP2-009	797	125aa	ENSP00000448386.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YI29	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000550144.1	CTDSP2-006	544	182aa	ENSP00000448299.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000551594.1	CTDSP2-007	900	102aa	ENSP00000448951.1	Nonsense mediated decay		F8VYL0	-	-
ENST00000547169.1	CTDSP2-005	1340	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552294.1	CTDSP2-008	436	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 3, Transcript length: 988 bps, Translation length: 119 residues

Version

ENST00000547701.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000409358 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000547701.1 CTDSP2-004

Summary