Transcript: ENST00000417171.1 PDZK1-201

Description

PDZ domain containing 1 [Source:HGNC Symbol;Acc:8821]

Gene Synonyms

CAP70, CLAMP, NHERF-3, NHERF3, PDZD1

Location

Chromosome 1: 145,727,724-145,764,067 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 24 domains and features, is associated with 15494 variant alleles and maps to 798 oligo probes.

Gene

This transcript is a product of gene ENSG00000174827.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000344770.2	PDZK1-001	2084	519aa	ENSP00000342143.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS924	Q5T2W1	NM_002614.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417171.1	PDZK1-201	2032	519aa	ENSP00000394485.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS924	Q5T2W1	NM_001201325.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451928.2	PDZK1-202	1424	408aa	ENSP00000403422.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55629	Q5T2W1	NM_001201326.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443667.1	PDZK1-002	1010	264aa	ENSP00000409291.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T2W1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465595.1	PDZK1-003	642	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000429537.2	PDZK1-004	578	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466386.1	PDZK1-005	370	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,032 bps, Translation length: 519 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5T2W1

CCDS

This transcript is a member of the Human CCDS set: CCDS924

Version

ENST00000417171.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript having same CDS:	OTTHUMT00000038502 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000417171.1 PDZK1-201

Summary