Transcript: ENST00000380359.3 NET1-006

Description

neuroepithelial cell transforming 1 [Source:HGNC Symbol;Acc:14592]

Gene Synonyms

ARHGEF8, NET1A

Location

Chromosome 10: 5,488,574-5,500,426 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 13 domains and features, is associated with 5041 variant alleles and maps to 549 oligo probes.

Gene

This transcript is a product of gene ENSG00000173848.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355029.4	NET1-005	3402	596aa	ENSP00000347134.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41483	B4E1Y1 Q5SQI5 Q7Z628	NM_001047160.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380359.3	NET1-006	3253	542aa	ENSP00000369717.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7067	B4E1Y1 Q5SQI7 Q7Z628	NM_005863.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542715.1	NET1-201	2016	415aa	ENSP00000446452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E1Y1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449083.1	NET1-003	637	160aa	ENSP00000403101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SQI6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000484741.1	NET1-004	757	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486354.1	NET1-001	599	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465087.1	NET1-002	403	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 3,253 bps, Translation length: 542 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z628

CCDS

This transcript is a member of the Human CCDS set: CCDS7067

Version

ENST00000380359.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000046554 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000380359.3 NET1-006

Summary