Transcript: ENST00000319921.4 RNF213-002

Description

ring finger protein 213 [Source:HGNC Symbol;Acc:14539]

Gene Synonyms

ALO17, C17orf27, KIAA1554, KIAA1618, MYMY2, MYSTR, NET57

Location

Chromosome 17: 78,234,669-78,295,263 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 7 domains and features, is associated with 34321 variant alleles and maps to 499 oligo probes.

Gene

This transcript is a product of gene ENSG00000173821.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000582970.1	RNF213-020	21055	5207aa	ENSP00000464087.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58606	H3BLU6 Q63HN8	NM_001256071.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508628.2	RNF213-001	17730	5256aa	ENSP00000425956.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BLU6 Q63HN8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000336301.6	RNF213-201	11651	3280aa	ENSP00000338218.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BLU6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000319921.4	RNF213-002	5316	1063aa	ENSP00000324392.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11772	Q63HN8 Q9H932	NM_020954.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456466.1	RNF213-202	4796	1550aa	ENSP00000392123.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QTP8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000573038.1	RNF213-015	699	106aa	ENSP00000460462.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000427003.3	RNF213-006	3552	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000411702.3	RNF213-005	6428	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559070.1	RNF213-003	4644	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560083.1	RNF213-007	4212	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558116.1	RNF213-004	3768	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573919.1	RNF213-019	899	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559603.1	RNF213-010	765	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560694.1	RNF213-008	639	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571908.1	RNF213-014	624	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573548.1	RNF213-012	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559864.1	RNF213-011	594	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570776.1	RNF213-018	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574060.1	RNF213-013	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558488.1	RNF213-009	526	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000572622.1	RNF213-017	320	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574909.1	RNF213-016	298	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 16, Transcript length: 5,316 bps, Translation length: 1,063 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q63HN8

CCDS

This transcript is a member of the Human CCDS set: CCDS11772

Version

ENST00000319921.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000415454 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000319921.4 RNF213-002

Summary