Transcript: ENST00000476791.1 SPTLC3-005

Description

serine palmitoyltransferase, long chain base subunit 3 [Source:HGNC Symbol;Acc:16253]

Gene Synonyms

C20orf38, FLJ11112, LCB2B, LCB3, SPT3, SPTLC2L, dJ718P11, dJ718P11.1, hLCB2b

Location

Chromosome 20: 12,989,627-13,031,666 forward strand.

About this transcript

This transcript has 2 exons, is associated with 17444 variant alleles and maps to 219 oligo probes.

Gene

This transcript is a product of gene ENSG00000172296.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399002.2	SPTLC3-006	3830	552aa	ENSP00000381968.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13115	B1AKS2 Q8N2H1 Q9NUV7	NM_018327.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378194.4	SPTLC3-201	1615	329aa	ENSP00000367436.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKS2 C9JC36	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450297.1	SPTLC3-002	645	215aa	ENSP00000409125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKS3	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000434210.1	SPTLC3-001	572	139aa	ENSP00000389749.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKS2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000431275.1	SPTLC3-003	453	121aa	ENSP00000409760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476791.1	SPTLC3-005	2480	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485952.1	SPTLC3-004	277	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,480 bps,

Version

ENST00000476791.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000078036 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000476791.1 SPTLC3-005

Summary