Transcript: ENST00000377298.4 CLSTN1-001

Description

calsyntenin 1 [Source:HGNC Symbol;Acc:17447]

Gene Synonyms

ALC-ALPHA, CDHR12, CS1, CSTN1, KIAA0911, PIK3CD, XB31alpha, alcalpha1, alcalpha2

Location

About this transcript

This transcript has 19 exons, is annotated with 27 domains and features, is associated with 46849 variant alleles and maps to 757 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000377298.4	CLSTN1-001	5221	981aa	ENSP00000366513.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30580	O94985	NM_001009566.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377288.3	CLSTN1-201	5162	962aa	ENSP00000366502.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E3Q1 Q5SR54	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361311.4	CLSTN1-002	4647	971aa	ENSP00000354997.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS105	O94985	NM_014944.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435891.1	CLSTN1-003	3829	782aa	ENSP00000401934.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SR54	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477264.1	CLSTN1-006	2169	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464286.1	CLSTN1-005	563	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 5,221 bps, Translation length: 981 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O94985

CCDS

This transcript is a member of the Human CCDS set: CCDS30580

Version

ENST00000377298.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000004239 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.