Transcript: ENST00000353963.3 SLC23A1-002

Description

solute carrier family 23 (ascorbic acid transporter), member 1 [Source:HGNC Symbol;Acc:10974]

Gene Synonyms

SLC23A2, SVCT1, YSPL3

Location

Chromosome 5: 138,702,885-138,718,981 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 14 domains and features, is associated with 7576 variant alleles and maps to 517 oligo probes.

Gene

This transcript is a product of gene ENSG00000170482.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000353963.3	SLC23A1-002	2303	602aa	ENSP00000302851.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4213	Q9UHI7	NM_152685.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000348729.3	SLC23A1-001	2299	598aa	ENSP00000302701.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4212	Q9UHI7	NM_005847.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508270.1	SLC23A1-005	509	169aa	ENSP00000427271.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YAJ1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000504513.1	SLC23A1-009	406	136aa	ENSP00000422688.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000503919.1	SLC23A1-007	559	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502863.1	SLC23A1-006	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506512.1	SLC23A1-008	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 2,303 bps, Translation length: 602 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UHI7

CCDS

This transcript is a member of the Human CCDS set: CCDS4213

Version

ENST00000353963.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000374184 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000353963.3 SLC23A1-002

Summary