Transcript: ENST00000441778.2 LDB2-003

Description

LIM domain binding 2 [Source:HGNC Symbol;Acc:6533]

Gene Synonyms

CLIM1, LDB1

Location

Chromosome 4: 16,503,164-16,900,217 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 4 domains and features, is associated with 172338 variant alleles and maps to 414 oligo probes.

Gene

This transcript is a product of gene ENSG00000169744.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000502640.1	LDB2-004	2626	313aa	ENSP00000423963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z2D3 D6RAT1 E9PFI4 Q4W5E7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000304523.5	LDB2-001	2548	373aa	ENSP00000306772.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3420	D6RAT1 O43679 Q4W5E7	NM_001290.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441778.2	LDB2-003	2476	331aa	ENSP00000392089.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47031	D6RAT1 O43679 Q4W5E7	NM_001130834.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515064.1	LDB2-007	2295	371aa	ENSP00000422552.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAT1 G5E9Y7 Q4W5E7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507464.1	LDB2-005	1485	294aa	ENSP00000425754.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000503178.2	LDB2-201	1108	189aa	ENSP00000440940.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z2D3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506732.1	LDB2-010	567	164aa	ENSP00000421767.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAT1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000508918.1	LDB2-006	1498	110aa	ENSP00000424770.1	Nonsense mediated decay		E7EX95 Q4W5E7	-	-
ENST00000512345.1	LDB2-014	923	106aa	ENSP00000424676.1	Nonsense mediated decay		E9PGU0 Q4W5E7	-	-
ENST00000503829.1	LDB2-018	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504886.1	LDB2-015	574	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503153.1	LDB2-017	573	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000510825.1	LDB2-013	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513457.1	LDB2-011	530	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504189.1	LDB2-009	499	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509803.1	LDB2-008	2718	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508804.1	LDB2-012	515	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,476 bps, Translation length: 331 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43679

CCDS

This transcript is a member of the Human CCDS set: CCDS47031

Version

ENST00000441778.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000359763 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000441778.2 LDB2-003

Summary