Transcript: ENST00000369957.3 MECP2-003

Description

methyl CpG binding protein 2 (Rett syndrome) [Source:HGNC Symbol;Acc:6990]

Gene Synonyms

AUTSX3, MRX16, MRX79, MRXS13, MRXSL, PPMX, RS, RTS, RTT

Location

Chromosome X: 153,296,821-153,363,120 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 21770 variant alleles and maps to 226 oligo probes.

Gene

This transcript is a product of gene ENSG00000169057.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303391.6	MECP2-001	10505	486aa	ENSP00000301948.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14741	C9JH89 D3YJ43 P51608	NM_004992.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453960.2	MECP2-002	1685	498aa	ENSP00000395535.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48193	P51608	NM_001110792.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407218.1	MECP2-005	892	172aa	ENSP00000384865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MCB4 C9JH89	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415944.1	MECP2-008	414	50aa	ENSP00000416267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JH89	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000369957.3	MECP2-003	784	34aa	ENSP00000358973.3	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460227.1	MECP2-012	1299	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488293.2	MECP2-010	1200	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463644.1	MECP2-011	1089	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486506.1	MECP2-004	875	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481807.1	MECP2-013	436	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496908.1	MECP2-006	351	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 784 bps, Translation length: 34 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000369957.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000061146 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000369957.3 MECP2-003

Summary