Transcript: ENST00000335613.5 VWCE-001

Description

von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:26487]

Gene Synonyms

FLJ32009, URG11, VWC1

Location

About this transcript

This transcript has 20 exons, is annotated with 70 domains and features, is associated with 16533 variant alleles and maps to 569 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335613.5	VWCE-001	3640	955aa	ENSP00000334186.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8002	B4DY31 Q96DN2	NM_152718.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535710.1	VWCE-004	1437	420aa	ENSP00000442570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DY31	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000301770.6	VWCE-002	3364	219aa	ENSP00000301770.6	Nonsense mediated decay		Q96DN2	-	-
ENST00000535599.1	VWCE-003	883	173aa	ENSP00000441565.1	Nonsense mediated decay		B4DS56	-	-
ENST00000538438.1	VWCE-006	1076	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000398808.3	VWCE-005	717	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000538579.1	VWCE-007	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 3,640 bps, Translation length: 955 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96DN2

CCDS

This transcript is a member of the Human CCDS set: CCDS8002

Version

ENST00000335613.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000398811 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.