Transcript: ENST00000373006.1 USP49-001

Description

ubiquitin specific peptidase 49 [Source:HGNC Symbol;Acc:20078]

Gene Synonyms

MGC20741

Location

Chromosome 6: 41,765,383-41,863,099 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 17 domains and features, is associated with 39858 variant alleles and maps to 374 oligo probes.

Gene

This transcript is a product of gene ENSG00000164663.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394253.3	USP49-007	9034	688aa	ENSP00000377797.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69111	A6PVU2 Q70CQ1	NM_001286554.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373006.1	USP49-001	3177	640aa	ENSP00000362097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4861	A6PVU2 Q70CQ1	NM_018561.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000297229.2	USP49-201	3062	640aa	ENSP00000297229.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4861	A6PVU2 Q70CQ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373010.1	USP49-002	2446	585aa	ENSP00000362101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVU2 Q5T3E1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373009.3	USP49-202	2067	688aa	ENSP00000362100.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69111	A6PVU2 Q70CQ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423567.1	USP49-005	752	15aa	ENSP00000411603.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000437061.1	USP49-006	553	37aa	ENSP00000410003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PVU2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000448078.1	USP49-004	480	52aa	ENSP00000389842.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 4, Transcript length: 3,177 bps, Translation length: 640 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q70CQ1

CCDS

This transcript is a member of the Human CCDS set: CCDS4861

Version

ENST00000373006.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000040536 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000373006.1 USP49-001

Summary