Transcript: ENST00000519739.1 EBF1-009

Description

early B-cell factor 1 [Source:HGNC Symbol;Acc:3126]

Gene Synonyms

COE1, EBF, O/E-1, OLF1

Location

Chromosome 5: 158,122,928-158,523,378 reverse strand.

About this transcript

This transcript has 14 exons, is associated with 169058 variant alleles and maps to 639 oligo probes.

Gene

This transcript is a product of gene ENSG00000164330.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000313708.6	EBF1-001	5250	591aa	ENSP00000322898.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4343	Q9UH73	NM_024007.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380654.4	EBF1-002	2345	560aa	ENSP00000370029.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UH73	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517373.1	EBF1-006	2277	523aa	ENSP00000428020.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFQ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518836.1	EBF1-010	5127	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000523464.1	EBF1-008	766	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518323.1	EBF1-007	602	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000523315.1	EBF1-004	490	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519739.1	EBF1-009	4735	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519890.1	EBF1-005	4695	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522192.1	EBF1-003	1911	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 0, Transcript length: 4,735 bps,

Version

ENST00000519739.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000374117 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000519739.1 EBF1-009

Summary