Transcript: ENST00000296682.3 PRDM9-001

Description

PR domain containing 9 [Source:HGNC Symbol;Acc:13994]

Gene Synonyms

MEISETZ, MSBP3, PFM6, PRMD9, ZNF899

Location

About this transcript

This transcript has 11 exons, is annotated with 86 domains and features, is associated with 11758 variant alleles and maps to 495 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000296682.3	PRDM9-001	3691	894aa	ENSP00000296682.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43307	D2E453 D2KI85 D6RD68 Q9NQV7	NM_020227.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502755.1	PRDM9-003	558	100aa	ENSP00000425471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RD68	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 3,691 bps, Translation length: 894 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NQV7

CCDS

This transcript is a member of the Human CCDS set: CCDS43307

Version

ENST00000296682.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000366375 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.