Transcript: ENST00000419445.1 PGGT1B-001

Description

protein geranylgeranyltransferase type I, beta subunit [Source:HGNC Symbol;Acc:8895]

Gene Synonyms

BGGI, GGTI

Location

About this transcript

This transcript has 9 exons, is annotated with 7 domains and features, is associated with 23639 variant alleles and maps to 588 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000419445.1	PGGT1B-001	2727	377aa	ENSP00000404676.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4116	P53609	NM_005023.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379615.3	PGGT1B-002	903	300aa	ENSP00000368935.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P53609	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514178.1	PGGT1B-004	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000296642.4	PGGT1B-005	552	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503638.1	PGGT1B-003	579	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,727 bps, Translation length: 377 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P53609

CCDS

This transcript is a member of the Human CCDS set: CCDS4116

Version

ENST00000419445.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250855 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.