Transcript: ENST00000535009.1 TPCN2-004

Description

two pore segment channel 2 [Source:HGNC Symbol;Acc:20820]

Gene Synonyms

SHEP10, TPC2

Location

About this transcript

This transcript has 14 exons, is associated with 16681 variant alleles and maps to 318 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000294309.3	TPCN2-001	2931	752aa	ENSP00000294309.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8189	Q8NHX9	NM_139075.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542467.1	TPCN2-003	2000	570aa	ENSP00000445551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ETX0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442692.2	TPCN2-005	4376	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000534832.1	TPCN2-006	435	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535009.1	TPCN2-004	2175	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 0, Transcript length: 2,175 bps,

Version

ENST00000535009.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000396880 (version 2)