Transcript: ENST00000292067.7 AMICA1-003

Description

adhesion molecule, interacts with CXADR antigen 1 [Source:HGNC Symbol;Acc:19084]

Gene Synonyms

AMICA, CREA7-1, CREA7-4, Gm638, JAML

Location

Chromosome 11: 118,064,678-118,084,074 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 15 domains and features, is associated with 7847 variant alleles and maps to 376 oligo probes.

Gene

This transcript is a product of gene ENSG00000160593.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000292067.7	AMICA1-003	1959	384aa	ENSP00000292067.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8391	E9PNS8 Q496M1 Q86YT9	NM_153206.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356289.5	AMICA1-001	1944	394aa	ENSP00000348635.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41723	E9PJJ4 E9PNS8 Q496M1 Q86YT9	NM_001098526.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533261.1	AMICA1-004	1508	383aa	ENSP00000436117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJJ4 E9PNS8 E9PR26	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526620.1	AMICA1-002	1383	355aa	ENSP00000431218.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66240	E9PNS8 Q496M1	NM_001286571.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524477.1	AMICA1-011	591	120aa	ENSP00000432769.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNS8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000525565.1	AMICA1-009	574	155aa	ENSP00000431791.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJJ4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000526595.1	AMICA1-007	1935	305aa	ENSP00000431614.1	Nonsense mediated decay		E9PKK2 E9PNS8	-	-
ENST00000527877.1	AMICA1-010	547	66aa	ENSP00000435145.1	Nonsense mediated decay		E9PLF9	-	-
ENST00000534294.1	AMICA1-005	5610	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531530.1	AMICA1-013	2624	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529164.1	AMICA1-006	1485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531536.1	AMICA1-012	623	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,959 bps, Translation length: 384 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86YT9

CCDS

This transcript is a member of the Human CCDS set: CCDS8391

Version

ENST00000292067.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000392103 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000292067.7 AMICA1-003

Summary