Transcript: ENST00000269081.4 ABCA10-001

Description

ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:30]

Gene Synonyms

EST698739

Location

Chromosome 17: 67,144,148-67,240,987 reverse strand.

About this transcript

This transcript has 40 exons, is annotated with 32 domains and features, is associated with 42376 variant alleles and maps to 1125 oligo probes.

Gene

This transcript is a product of gene ENSG00000154263.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000269081.4	ABCA10-001	6362	1543aa	ENSP00000269081.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11684	K7ERP5 Q8WWZ4	NM_080282.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416101.2	ABCA10-201	6155	466aa	ENSP00000407772.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8WWZ4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432313.2	ABCA10-203	2238	452aa	ENSP00000387674.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8WWZ4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423818.2	ABCA10-202	688	92aa	ENSP00000394639.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8WWZ4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521538.1	ABCA10-010	531	76aa	ENSP00000466506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ERP5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000522787.1	ABCA10-011	362	45aa	ENSP00000468351.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ERP5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000522406.1	ABCA10-003	6125	452aa	ENSP00000429853.1	Nonsense mediated decay		Q8WWZ4	-	-
ENST00000518929.1	ABCA10-004	5375	340aa	ENSP00000430341.1	Nonsense mediated decay		E5RFP5	-	-
ENST00000523419.1	ABCA10-005	4875	1326aa	ENSP00000428032.1	Nonsense mediated decay		E5RFN6	-	-
ENST00000523512.1	ABCA10-002	1311	92aa	ENSP00000429945.1	Nonsense mediated decay		Q8WWZ4	-	-
ENST00000524273.1	ABCA10-009	584	137aa	ENSP00000429795.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000519732.1	ABCA10-006	2183	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521526.2	ABCA10-008	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524231.1	ABCA10-007	1267	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588514.1	ABCA10-014	472	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 40, Coding exons: 37, Transcript length: 6,362 bps, Translation length: 1,543 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8WWZ4

CCDS

This transcript is a member of the Human CCDS set: CCDS11684

Version

ENST00000269081.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs10491178, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HAPMAP-CHD.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000379881 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000269081.4 ABCA10-001

Summary