Transcript: ENST00000284425.2 ABCA6-001

Description

ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:36]

Gene Synonyms

EST155051

Location

About this transcript

This transcript has 39 exons, is annotated with 37 domains and features, is associated with 26751 variant alleles and maps to 1084 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000284425.2	ABCA6-001	5300	1617aa	ENSP00000284425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11683	Q8N139	NM_080284.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590645.1	ABCA6-002	1511	185aa	ENSP00000466862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N139	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446604.2	ABCA6-005	2176	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000592493.1	ABCA6-006	405	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590311.1	ABCA6-004	8186	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589803.1	ABCA6-003	1706	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589482.1	ABCA6-007	447	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 39, Coding exons: 38, Transcript length: 5,300 bps, Translation length: 1,617 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N139

CCDS

This transcript is a member of the Human CCDS set: CCDS11683

Version

ENST00000284425.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000450463 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.