Transcript: ENST00000356860.3 CACNA2D1-001

Description

calcium channel, voltage-dependent, alpha 2/delta subunit 1 [Source:HGNC Symbol;Acc:1399]

Gene Synonyms

CACNA2, CACNL2A, CCHL2A, LINC01112, MHS3, lncRNA-N3

Location

Chromosome 7: 81,575,760-82,073,114 reverse strand.

About this transcript

This transcript has 39 exons, is annotated with 15 domains and features, is associated with 226566 variant alleles and maps to 1193 oligo probes.

Gene

This transcript is a product of gene ENSG00000153956.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356860.3	CACNA2D1-001	7563	1091aa	ENSP00000349320.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5598	O95026 P54289 Q9UDL7 Q9UDQ3 Q9UDU5	NM_000722.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356253.5	CACNA2D1-201	3858	1103aa	ENSP00000348589.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O95026 P54289 Q9UDL7 Q9UDU5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535308.1	CACNA2D1-202	1447	303aa	ENSP00000443124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z658	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423588.1	CACNA2D1-002	1429	309aa	ENSP00000405395.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ERK3 O95026 Q9UDU5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443883.1	CACNA2D1-005	840	280aa	ENSP00000409374.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000464354.1	CACNA2D1-004	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484706.1	CACNA2D1-003	532	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461275.1	CACNA2D1-011	467	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492734.1	CACNA2D1-007	594	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486539.1	CACNA2D1-008	526	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475237.1	CACNA2D1-010	419	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466806.1	CACNA2D1-006	418	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469297.1	CACNA2D1-009	413	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 39, Coding exons: 39, Transcript length: 7,563 bps, Translation length: 1,091 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P54289

CCDS

This transcript is a member of the Human CCDS set: CCDS5598

Version

ENST00000356860.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253340 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000356860.3 CACNA2D1-001

Summary