Transcript: ENST00000358587.1 FRMD1-001

Description

FERM domain containing 1 [Source:HGNC Symbol;Acc:21240]

Gene Synonyms

DKFZp434O0117, FLJ00181, FLJ22615, FLJ40260, bA164L23.1

Location

Chromosome 6: 168,456,484-168,479,857 reverse strand.

About this transcript

This transcript has 12 exons, is associated with 12858 variant alleles and maps to 538 oligo probes.

Gene

This transcript is a product of gene ENSG00000153303.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000283309.6	FRMD1-004	3067	549aa	ENSP00000283309.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5306	F5GXR0 Q8N878	NM_024919.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440994.2	FRMD1-005	2857	481aa	ENSP00000414115.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47518	F5GXR0 Q8N878	NM_001122841.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537786.1	FRMD1-201	1649	320aa	ENSP00000440078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXR0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511714.1	FRMD1-008	608	196aa	ENSP00000424439.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB43	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000468647.1	FRMD1-003	3821	180aa	ENSP00000427668.1	Nonsense mediated decay		H0Y9A3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000509157.1	FRMD1-007	2108	180aa	ENSP00000423552.1	Nonsense mediated decay		H0Y9A3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000432403.1	FRMD1-002	2650	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000358587.1	FRMD1-001	4677	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000336070.7	FRMD1-006	1600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506415.1	FRMD1-009	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 0, Transcript length: 4,677 bps,

Version

ENST00000358587.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000043182 (version 5)

Favourite species

All species

Recent locations

Transcript: ENST00000358587.1 FRMD1-001

Summary