Transcript: ENST00000478568.1 AHCTF1-005

Description

AT hook containing transcription factor 1 [Source:HGNC Symbol;Acc:24618]

Gene Synonyms

ELYS, MST108, TMBS62

Location

Chromosome 1: 247,079,616-247,095,280 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 1 domain and feature, is associated with 8721 variant alleles and maps to 97 oligo probes.

Gene

This transcript is a product of gene ENSG00000153207.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000326225.3	AHCTF1-002	8633	2275aa	ENSP00000355465.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1629	C9J5C5 Q8WYP5	NM_015446.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366508.1	AHCTF1-001	8751	2301aa	ENSP00000355464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5C5 Q8WYP5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391829.2	AHCTF1-201	8629	2266aa	ENSP00000375705.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5C5 Q8WYP5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478568.1	AHCTF1-005	611	67aa	ENSP00000417115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5C5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000498601.1	AHCTF1-007	355	80aa	ENSP00000418007.1	Nonsense mediated decay		H7C4S1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000470300.1	AHCTF1-003	7041	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483900.1	AHCTF1-004	3451	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477526.1	AHCTF1-006	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 611 bps, Translation length: 67 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000478568.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000357437 (version 1)

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Transcript: ENST00000478568.1 AHCTF1-005

Summary