Transcript: ENST00000360060.3 PLOD2-002

Description

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 [Source:HGNC Symbol;Acc:9082]

Gene Synonyms

LH2, TLH

Location

Chromosome 3: 145,787,231-145,878,954 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 12 domains and features, is associated with 40035 variant alleles and maps to 666 oligo probes.

Gene

This transcript is a product of gene ENSG00000152952.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282903.5	PLOD2-001	3732	758aa	ENSP00000282903.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3132	E7ETU9 O00469 Q96AR9 Q96QU5 Q9Y6D3	NM_182943.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360060.3	PLOD2-002	3665	737aa	ENSP00000353170.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3131	O00469 Q96AR9	NM_000935.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000461497.1	PLOD2-005	3043	418aa	ENSP00000419354.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KWS3 Q96AR9 Q96QU5 Q9Y6D3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000494950.1	PLOD2-003	2908	703aa	ENSP00000420094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ETU9 Q96AR9 Q96QU5 Q9Y6D3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000469350.1	PLOD2-006	723	229aa	ENSP00000419963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JXZ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000480704.1	PLOD2-007	550	98aa	ENSP00000419880.1	Nonsense mediated decay		F8WEW3	-	-
ENST00000478436.1	PLOD2-004	3835	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495700.1	PLOD2-010	761	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460520.1	PLOD2-008	530	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475505.1	PLOD2-009	480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 3,665 bps, Translation length: 737 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00469

CCDS

This transcript is a member of the Human CCDS set: CCDS3131

Version

ENST00000360060.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000355185 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000360060.3 PLOD2-002

Summary