Transcript: ENST00000508642.1 SPOCK1-007

Description

sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 [Source:HGNC Symbol;Acc:11251]

Gene Synonyms

SPOCK, TESTICAN, TIC1, TICN1, testican-1

Location

Chromosome 5: 136,324,242-136,328,849 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2016 variant alleles and maps to 77 oligo probes.

Gene

This transcript is a product of gene ENSG00000152377.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394945.1	SPOCK1-001	4846	439aa	ENSP00000378401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4191	D3DQB3 D6RAM7 D6RB21 Q08629	NM_004598.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000282223.7	SPOCK1-201	1361	439aa	ENSP00000282223.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4191	D3DQB3 D6RAM7 D6RB21 Q08629	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510689.1	SPOCK1-004	571	67aa	ENSP00000421677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAM7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505690.1	SPOCK1-003	453	139aa	ENSP00000424517.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB21	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510405.1	SPOCK1-006	399	13aa	ENSP00000421418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000509978.1	SPOCK1-008	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509293.1	SPOCK1-005	553	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508642.1	SPOCK1-007	499	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503916.1	SPOCK1-002	480	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000515091.1	SPOCK1-009	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 499 bps,

Version

ENST00000508642.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373466 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000508642.1 SPOCK1-007

Summary