Transcript: ENST00000545249.1 LAMTOR1-006

Description

late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 [Source:HGNC Symbol;Acc:26068]

Gene Synonyms

C11orf59, FLJ20625, PDRO, Pdro, Ragulator1, p18, p27RF-Rho

Location

Chromosome 11: 71,796,941-71,814,292 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 7527 variant alleles and maps to 154 oligo probes.

Gene

This transcript is a product of gene ENSG00000149357.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000538404.1	LAMTOR1-004	1346	160aa	ENSP00000439011.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H3Y3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000278671.5	LAMTOR1-001	1179	161aa	ENSP00000278671.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8209	B4DUK2 Q6IAA8	NM_017907.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545249.1	LAMTOR1-006	965	142aa	ENSP00000440738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GX19	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544594.1	LAMTOR1-003	849	79aa	ENSP00000438717.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000535107.1	LAMTOR1-008	619	99aa	ENSP00000445170.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H479	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535872.1	LAMTOR1-002	899	76aa	ENSP00000439482.1	Nonsense mediated decay		F5H267	-	-
ENST00000539797.1	LAMTOR1-007	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000541403.1	LAMTOR1-005	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 965 bps, Translation length: 142 residues

Version

ENST00000545249.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000396730 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000545249.1 LAMTOR1-006

Summary