Transcript: ENST00000382100.3 VLDLR-001

Description

very low density lipoprotein receptor [Source:HGNC Symbol;Acc:12698]

Gene Synonyms

CARMQ1, CHRMQ1, VLDLRCH

Location

About this transcript

This transcript has 19 exons, is annotated with 101 domains and features, is associated with 20873 variant alleles and maps to 770 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382100.3	VLDLR-001	9163	873aa	ENSP00000371532.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6446	P98155	NM_003383.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382099.2	VLDLR-002	3240	845aa	ENSP00000371531.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34979	A8K0G2 P98155 Q5VVF5	NM_001018056.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382096.1	VLDLR-005	736	173aa	ENSP00000371528.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VVF8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478776.1	VLDLR-004	510	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 9,163 bps, Translation length: 873 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P98155

CCDS

This transcript is a member of the Human CCDS set: CCDS6446

Version

ENST00000382100.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000051519 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.