Transcript: ENST00000527502.1 WHSC1L1-005

Description

Wolf-Hirschhorn syndrome candidate 1-like 1 [Source:HGNC Symbol;Acc:12767]

Gene Synonyms

FLJ20353, NSD3, pp14328

Location

Chromosome 8: 38,133,061-38,239,364 reverse strand.

About this transcript

This transcript has 24 exons, is annotated with 41 domains and features, is associated with 42179 variant alleles and maps to 641 oligo probes.

Gene

This transcript is a product of gene ENSG00000147548.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000317025.8	WHSC1L1-001	10776	1437aa	ENSP00000313983.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43729	E9PKA2 E9PQ95 Q9BZ95	NM_023034.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433384.2	WHSC1L1-003	5273	1388aa	ENSP00000393284.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKA2 E9PQ95 Q9BZ95	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527502.1	WHSC1L1-005	4471	1426aa	ENSP00000434730.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZL11 E9PKA2 E9PQ95	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000316985.3	WHSC1L1-002	3995	645aa	ENSP00000313410.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6105	E9PKA2 E9PQ95 Q9BZ95	NM_017778.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528627.1	WHSC1L1-011	1524	77aa	ENSP00000435073.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YE68	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000529223.1	WHSC1L1-009	1032	282aa	ENSP00000435422.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKA2 E9PQ95	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534155.1	WHSC1L1-008	577	25aa	ENSP00000432544.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQ95	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534539.1	WHSC1L1-010	301	15aa	ENSP00000431598.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000525081.1	WHSC1L1-007	1581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528828.1	WHSC1L1-004	1376	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000528304.1	WHSC1L1-012	508	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000526050.1	WHSC1L1-013	359	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 4,471 bps, Translation length: 1,426 residues

Version

ENST00000527502.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000381939 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000527502.1 WHSC1L1-005

Summary