Transcript: ENST00000507354.1 SLC30A5-004

Description

solute carrier family 30 (zinc transporter), member 5 [Source:HGNC Symbol;Acc:19089]

Gene Synonyms

FLJ12496, FLJ12756, MGC5499, ZNT5, ZNTL1, ZTL1, ZnT-5

Location

Chromosome 5: 68,398,399-68,419,366 forward strand.

About this transcript

This transcript has 11 exons, is associated with 8554 variant alleles and maps to 395 oligo probes.

Gene

This transcript is a product of gene ENSG00000145740.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396591.3	SLC30A5-001	4360	765aa	ENSP00000379836.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3996	Q8TAD4 Q9BTR6 Q9BY48 Q9H9X0	NM_022902.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380860.4	SLC30A5-002	1317	118aa	ENSP00000370241.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34173	Q8TAD4	NM_024055.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511158.1	SLC30A5-008	763	84aa	ENSP00000423078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000502979.1	SLC30A5-003	681	77aa	ENSP00000421251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58955	Q8TAD4	NM_001251969.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504103.1	SLC30A5-005	382	71aa	ENSP00000426751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6REM2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000513937.1	SLC30A5-007	555	65aa	ENSP00000427111.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507354.1	SLC30A5-004	2310	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512367.1	SLC30A5-006	459	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 0, Transcript length: 2,310 bps,

Version

ENST00000507354.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000368689 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000507354.1 SLC30A5-004

Summary