Transcript: ENST00000517900.1 GTF2H2-016

Description

general transcription factor IIH, polypeptide 2, 44kDa [Source:HGNC Symbol;Acc:4656]

Gene Synonyms

BTF2, BTF2P44, GTF2H2, T-BTF2P44, TFIIH, p44

Location

Chromosome 5: 70,331,409-70,363,479 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 3 domains and features, is associated with 7095 variant alleles and maps to 708 oligo probes.

Gene

This transcript is a product of gene ENSG00000145736.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000330280.7	GTF2H2-003	2077	395aa	ENSP00000328901.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34183	J3KQC7 Q13888 R4GMV2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000274400.5	GTF2H2-001	2049	395aa	ENSP00000274400.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34183	J3KQC7 Q13888 R4GMV2	NM_001515.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425596.2	GTF2H2-201	1956	338aa	ENSP00000394164.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KQC7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517900.1	GTF2H2-016	659	123aa	ENSP00000429057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGC9 R4GMV2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521602.2	GTF2H2-022	457	23aa	ENSP00000473362.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GMV2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519783.1	GTF2H2-002	1953	51aa	ENSP00000428718.1	Nonsense mediated decay		D6RAW1 R4GMV2	-	-
ENST00000518898.2	GTF2H2-004	1569	152aa	ENSP00000473333.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000518275.1	GTF2H2-021	486	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521942.1	GTF2H2-008	1991	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000521858.1	GTF2H2-011	1874	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522654.1	GTF2H2-009	1106	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000523003.1	GTF2H2-010	860	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000523693.1	GTF2H2-024	811	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508592.2	GTF2H2-020	412	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 659 bps, Translation length: 123 residues

Version

ENST00000517900.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373095 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000517900.1 GTF2H2-016

Summary