Transcript: ENST00000509692.1 SKP2-004

Description

S-phase kinase-associated protein 2, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:10901]

Gene Synonyms

FBL1, FBXL1, FLB1, p45

Location

Chromosome 5: 36,152,230-36,182,616 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 2 domains and features, is associated with 11989 variant alleles and maps to 449 oligo probes.

Gene

This transcript is a product of gene ENSG00000145604.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000274255.6	SKP2-002	3759	424aa	ENSP00000274255.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3916	Q13309	NM_005983.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546211.1	SKP2-201	1646	210aa	ENSP00000443492.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58944	Q13309	NM_001243120.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000274254.5	SKP2-001	1537	410aa	ENSP00000274254.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3915	Q13309	NM_032637.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513151.1	SKP2-007	901	255aa	ENSP00000423188.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9R7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000508514.1	SKP2-006	821	217aa	ENSP00000421941.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAG5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509692.1	SKP2-004	1646	102aa	ENSP00000426004.1	Nonsense mediated decay		D6RF40	-	-
ENST00000513263.1	SKP2-008	694	102aa	ENSP00000426675.1	Nonsense mediated decay		D6RF40	-	-
ENST00000504386.1	SKP2-009	574	80aa	ENSP00000424234.1	Nonsense mediated decay		H0Y9I9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 3, Transcript length: 1,646 bps, Translation length: 102 residues

Version

ENST00000509692.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000367534 (version 1)

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Transcript: ENST00000509692.1 SKP2-004

Summary