Transcript: ENST00000476941.1 TRPC1-002

Description

transient receptor potential cation channel, subfamily C, member 1 [Source:HGNC Symbol;Acc:12333]

Gene Synonyms

HTRP-1, TRP1

Location

About this transcript

This transcript has 13 exons, is annotated with 27 domains and features, is associated with 31359 variant alleles and maps to 489 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000273482.6	TRPC1-001	4324	759aa	ENSP00000273482.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3126	P48995	NM_003304.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476941.1	TRPC1-002	3061	793aa	ENSP00000419313.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58856	P48995	NM_001251845.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000460401.1	TRPC1-004	397	65aa	ENSP00000418708.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000480101.1	TRPC1-005	674	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 3,061 bps, Translation length: 793 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P48995

CCDS

This transcript is a member of the Human CCDS set: CCDS58856

Version

ENST00000476941.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000354520 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.