Transcript: ENST00000476544.1 RAB5A-007

Description

RAB5A, member RAS oncogene family [Source:HGNC Symbol;Acc:9783]

Gene Synonyms

RAB5

Location

Chromosome 3: 19,988,902-19,992,717 forward strand.

About this transcript

This transcript has 2 exons, is associated with 2018 variant alleles and maps to 148 oligo probes.

Gene

This transcript is a product of gene ENSG00000144566.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000273047.4	RAB5A-001	2536	215aa	ENSP00000273047.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2633	P20339	NM_004162.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422242.1	RAB5A-003	1443	201aa	ENSP00000411941.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJA5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443878.1	RAB5A-005	753	15aa	ENSP00000398450.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000446547.1	RAB5A-002	1358	65aa	ENSP00000396632.1	Nonsense mediated decay		F8WD79	-	-
ENST00000412966.1	RAB5A-008	622	62aa	ENSP00000403533.1	Nonsense mediated decay		F8WCY6	-	-
ENST00000469122.1	RAB5A-011	918	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473608.1	RAB5A-010	868	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476544.1	RAB5A-007	532	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 532 bps,

Version

ENST00000476544.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000339748 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000476544.1 RAB5A-007

Summary