Transcript: ENST00000471645.1 SMYD2-004

Description

SET and MYND domain containing 2 [Source:HGNC Symbol;Acc:20982]

Gene Synonyms

HSKM-B, KMT3C, ZMYND14

Location

Chromosome 1: 214,454,468-214,510,473 forward strand.

About this transcript

This transcript has 10 exons, is associated with 23286 variant alleles and maps to 452 oligo probes.

Gene

This transcript is a product of gene ENSG00000143499.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000366957.5	SMYD2-001	1671	433aa	ENSP00000355924.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31022	I6L9H7 Q9NRG4	NM_020197.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415093.2	SMYD2-201	1078	272aa	ENSP00000388682.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I6L9H7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416415.1	SMYD2-006	697	96aa	ENSP00000409822.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0R0U3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000491455.1	SMYD2-003	3809	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460580.1	SMYD2-002	1618	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484459.1	SMYD2-005	463	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471645.1	SMYD2-004	4732	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 4,732 bps,

Version

ENST00000471645.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000090001 (version 2)

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Transcript: ENST00000471645.1 SMYD2-004

Summary