Transcript: ENST00000421609.1 CERS2-006

Description

ceramide synthase 2 [Source:HGNC Symbol;Acc:14076]

Gene Synonyms

FLJ10243, L3, LASS2, SP260, TMSG1

Location

Chromosome 1: 150,939,903-150,946,953 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features, is associated with 3434 variant alleles and maps to 268 oligo probes.

Gene

This transcript is a product of gene ENSG00000143418.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000271688.6	CERS2-201	2505	380aa	ENSP00000271688.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS973	H0YKH6 Q5SZE1 Q5SZE2 Q5SZE3 Q5SZE6 Q96G23	NM_181746.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368954.5	CERS2-001	2504	380aa	ENSP00000357950.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS973	H0YKH6 Q5SZE1 Q5SZE2 Q5SZE3 Q5SZE6 Q96G23	NM_022075.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561294.1	CERS2-012	1803	377aa	ENSP00000454160.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNU7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560793.2	CERS2-013	1661	228aa	ENSP00000453297.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000368949.4	CERS2-003	1002	304aa	ENSP00000357945.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKH6 Q5SZE1 Q5SZE2 Q5SZE3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000361419.5	CERS2-004	997	249aa	ENSP00000355020.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKH6 Q5SZE2 Q5SZE3 Q5SZE4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000558062.1	CERS2-014	896	222aa	ENSP00000452810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKH6 Q5SZE2 Q5SZE3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000421609.1	CERS2-006	738	192aa	ENSP00000393239.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SZE2 Q5SZE3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000457392.1	CERS2-005	545	128aa	ENSP00000394012.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SZE2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000345896.4	CERS2-002	2170	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482825.3	CERS2-010	1618	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460664.1	CERS2-007	850	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559020.1	CERS2-015	594	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559660.1	CERS2-011	242	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 738 bps, Translation length: 192 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000421609.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000084902 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000421609.1 CERS2-006

Summary