Transcript: ENST00000474171.1 RPL13A-010

Description

ribosomal protein L13a [Source:HGNC Symbol;Acc:10304]

Gene Synonyms

L13A, RNU32, RNU33, RNU34, RNU35, RNU35A, RPL13A, TSTA1, U32, U32A, U33, U34, U35

Location

Chromosome 19: 49,993,786-49,995,014 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1127 variant alleles and maps to 637 oligo probes.

Gene

This transcript is a product of gene ENSG00000142541.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000391857.4	RPL13A-001	1181	203aa	ENSP00000375730.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12768	P40429 Q8J015 Q9BSQ6	NM_012423.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467825.2	RPL13A-009	660	210aa	ENSP00000470037.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000484279.1	RPL13A-004	794	46aa	ENSP00000470768.1	Nonsense mediated decay		M0QZU1	-	-
ENST00000477613.2	RPL13A-008	796	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488946.1	RPL13A-002	2312	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476268.2	RPL13A-003	1623	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479992.1	RPL13A-006	850	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472481.1	RPL13A-007	728	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486930.1	RPL13A-005	652	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476300.1	RPL13A-012	619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474171.1	RPL13A-010	521	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468655.1	RPL13A-011	407	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 521 bps,

Version

ENST00000474171.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000258998 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000474171.1 RPL13A-010

Summary