Transcript: ENST00000404753.3 CAPN10-005

Description

calpain 10 [Source:HGNC Symbol;Acc:1477]

Gene Synonyms

CANP10, KIAA1845, NIDDM1

Location

Chromosome 2: 241,526,156-241,538,521 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 26 domains and features, is associated with 6981 variant alleles and maps to 476 oligo probes.

Gene

This transcript is a product of gene ENSG00000142330.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000391984.2	CAPN10-001	2644	672aa	ENSP00000375844.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42838	Q9HC96	NM_023083.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404753.3	CAPN10-005	2570	653aa	ENSP00000384422.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7WPF5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354082.4	CAPN10-007	1999	517aa	ENSP00000270362.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33420	Q9HC96	NM_023085.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000391982.2	CAPN10-201	1512	444aa	ENSP00000375842.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9HC96	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000270364.7	CAPN10-006	1267	139aa	ENSP00000270364.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9HC96	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000352879.4	CAPN10-002	862	138aa	ENSP00000289381.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9HC96	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432084.1	CAPN10-017	620	79aa	ENSP00000407090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C2P1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000416591.1	CAPN10-004	2514	444aa	ENSP00000400144.1	Nonsense mediated decay		Q9HC96	-	-
ENST00000270361.11	CAPN10-008	2453	274aa	ENSP00000270361.11	Nonsense mediated decay		Q9HC96	-	-
ENST00000391983.3	CAPN10-009	2320	544aa	ENSP00000375843.3	Nonsense mediated decay		Q9HC96	-	-
ENST00000357048.4	CAPN10-003	2202	513aa	ENSP00000349556.4	Nonsense mediated decay		Q9HC96	-	-
ENST00000426297.1	CAPN10-016	706	46aa	ENSP00000404064.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494738.1	CAPN10-010	4406	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493058.1	CAPN10-015	907	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463653.1	CAPN10-012	787	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465943.1	CAPN10-013	549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483602.1	CAPN10-014	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,570 bps, Translation length: 653 residues

Version

ENST00000404753.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000325635 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000404753.3 CAPN10-005

Summary