Transcript: ENST00000571995.1 RAB40B-001

Description

RAB40B, member RAS oncogene family [Source:HGNC Symbol;Acc:18284]

Gene Synonyms

RAR, SEC4L

Location

Chromosome 17: 80,612,849-80,656,604 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 20 domains and features, is associated with 22234 variant alleles and maps to 533 oligo probes.

Gene

This transcript is a product of gene ENSG00000141542.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000571995.1	RAB40B-001	3859	278aa	ENSP00000461785.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11816	J3KN64 Q12829	NM_006822.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000269347.6	RAB40B-002	2189	99aa	ENSP00000269347.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KN64	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538809.2	RAB40B-005	704	139aa	ENSP00000438897.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YFJ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000576148.1	RAB40B-010	343	42aa	ENSP00000458638.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L178	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000571880.1	RAB40B-012	1020	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571554.1	RAB40B-007	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572603.1	RAB40B-006	451	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000576359.1	RAB40B-003	2522	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570676.1	RAB40B-008	1104	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574132.1	RAB40B-009	832	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573395.1	RAB40B-011	517	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 3,859 bps, Translation length: 278 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12829

CCDS

This transcript is a member of the Human CCDS set: CCDS11816

Version

ENST00000571995.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000439007 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000571995.1 RAB40B-001

Summary