Transcript: ENST00000565454.1 TGFB1I1-012

Description

transforming growth factor beta 1 induced transcript 1 [Source:HGNC Symbol;Acc:11767]

Gene Synonyms

ARA55, HIC-5, HIC5, Hic-5, TSC-5

Location

Chromosome 16: 31,482,906-31,485,911 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 1505 variant alleles and maps to 162 oligo probes.

Gene

This transcript is a product of gene ENSG00000140682.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394863.3	TGFB1I1-001	1898	461aa	ENSP00000378332.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42156	H3BS04 H3BSN4 O43294	NM_001042454.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394858.2	TGFB1I1-002	1803	444aa	ENSP00000378327.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10713	H3BS04 H3BSN4 O43294	NM_015927.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361773.3	TGFB1I1-201	1773	444aa	ENSP00000355117.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10713	H3BS04 H3BSN4 O43294	NM_001164719.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567607.1	TGFB1I1-004	1770	444aa	ENSP00000457586.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10713	H3BS04 H3BSN4 O43294	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565360.1	TGFB1I1-020	684	216aa	ENSP00000455709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQC4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562566.1	TGFB1I1-015	668	89aa	ENSP00000456482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BS04	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565454.1	TGFB1I1-012	573	165aa	ENSP00000456783.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BS04 H3BSN4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000564804.1	TGFB1I1-005	1616	114aa	ENSP00000454688.1	Nonsense mediated decay		H3BN49 H3BS04	-	-
ENST00000567066.2	TGFB1I1-006	1453	52aa	ENSP00000456341.2	Nonsense mediated decay		H3BRP2	-	-
ENST00000563712.2	TGFB1I1-007	1302	61aa	ENSP00000459283.1	Nonsense mediated decay		I3L209	-	-
ENST00000564176.1	TGFB1I1-003	4973	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568142.2	TGFB1I1-019	2458	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569703.1	TGFB1I1-021	1005	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561785.1	TGFB1I1-017	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569254.1	TGFB1I1-014	570	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567524.1	TGFB1I1-016	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562165.1	TGFB1I1-018	466	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 573 bps, Translation length: 165 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000565454.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000432853 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000565454.1 TGFB1I1-012

Summary