Transcript: ENST00000422006.1 SSB-004

Description

Sjogren syndrome antigen B (autoantigen La) [Source:HGNC Symbol;Acc:11316]

Gene Synonyms

LARP3, La

Location

Chromosome 2: 170,648,443-170,663,581 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 16 domains and features, is associated with 6863 variant alleles and maps to 280 oligo probes.

Gene

This transcript is a product of gene ENSG00000138385.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000422006.1	SSB-004	2463	184aa	ENSP00000397029.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ERC4 E9PGX9 Q2F832 Q9UMH7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000409333.1	SSB-003	1782	408aa	ENSP00000386636.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2237	E7ERC4 E9PGX9 P05455 Q2F832 Q9UMH5 Q9UMH6 Q9UMH7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000260956.4	SSB-001	1709	408aa	ENSP00000260956.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2237	E7ERC4 E9PGX9 P05455 Q2F832 Q9UMH5 Q9UMH6 Q9UMH7	NM_003142.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417292.1	SSB-005	545	120aa	ENSP00000396890.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PGX9 Q9UMH7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000413002.1	SSB-006	674	134aa	ENSP00000395758.1	Nonsense mediated decay		E9PFL9 Q2F832 Q9UMH7	-	-
ENST00000490914.1	SSB-011	754	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474273.1	SSB-009	735	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461708.1	SSB-007	619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470621.1	SSB-013	440	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465871.1	SSB-010	421	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494051.1	SSB-012	392	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468600.1	SSB-008	290	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,463 bps, Translation length: 184 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000422006.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000333317 (version 7)

Favourite species

All species

Recent locations

Transcript: ENST00000422006.1 SSB-004

Summary