Transcript: ENST00000519236.1 TMPRSS4-002

Description

transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:11878]

Gene Synonyms

CAPH2, MT-SP2, TMPRSS3

Location

Chromosome 11: 117,947,786-117,989,165 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 21 domains and features, is associated with 19118 variant alleles and maps to 528 oligo probes.

Gene

This transcript is a product of gene ENSG00000137648.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000534111.1	TMPRSS4-001	5550	435aa	ENSP00000435184.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53716	G3V124 Q9NRS4	NM_019894.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437212.3	TMPRSS4-004	2074	437aa	ENSP00000416037.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31684	Q9NRS4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522824.1	TMPRSS4-008	2052	432aa	ENSP00000430547.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44743	E7ESG9 Q9NRS4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523251.1	TMPRSS4-006	1689	397aa	ENSP00000429209.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53717	E7ERX8	NM_001173552.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522307.1	TMPRSS4-005	1634	290aa	ENSP00000428814.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ESG9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517544.1	TMPRSS4-015	789	148aa	ENSP00000429833.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000524218.1	TMPRSS4-017	725	62aa	ENSP00000428246.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000522151.1	TMPRSS4-011	692	173aa	ENSP00000428407.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIH1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517483.1	TMPRSS4-007	2074	59aa	ENSP00000431062.1	Nonsense mediated decay		E5RJR8	-	-
ENST00000519236.1	TMPRSS4-002	1934	335aa	ENSP00000429889.1	Nonsense mediated decay		G3V124	-	-
ENST00000518413.2	TMPRSS4-022	700	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528118.1	TMPRSS4-021	3838	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519126.1	TMPRSS4-003	847	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519813.1	TMPRSS4-012	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000523770.1	TMPRSS4-014	480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522462.2	TMPRSS4-020	421	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000518610.1	TMPRSS4-016	379	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000520063.1	TMPRSS4-013	354	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 1,934 bps, Translation length: 335 residues

Version

ENST00000519236.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000377330 (version 1)

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Recent locations

Transcript: ENST00000519236.1 TMPRSS4-002

Summary