Transcript: ENST00000443945.2 LRCH1-003

Description

leucine-rich repeats and calponin homology (CH) domain containing 1 [Source:HGNC Symbol;Acc:20309]

Gene Synonyms

CHDC1, KIAA1016, NP81

Location

Chromosome 13: 47,127,305-47,279,755 forward strand.

About this transcript

This transcript has 13 exons, is associated with 61888 variant alleles and maps to 307 oligo probes.

Gene

This transcript is a product of gene ENSG00000136141.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000311191.6	LRCH1-002	4710	696aa	ENSP00000308493.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53866	C9J5B8 C9JWE0 Q9Y2L9	NM_001164213.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389798.3	LRCH1-001	4131	728aa	ENSP00000374448.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31972	C9J5B8 C9JWE0 Q9Y2L9	NM_015116.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389797.3	LRCH1-004	3314	763aa	ENSP00000374447.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53865	C9J5B8 C9JWE0 Q9Y2L9	NM_001164211.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000463929.1	LRCH1-005	554	98aa	ENSP00000417121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5B8 C9JWE0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478412.1	LRCH1-006	545	72aa	ENSP00000419256.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWE0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000443945.2	LRCH1-003	2070	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 0, Transcript length: 2,070 bps,

Version

ENST00000443945.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000354617 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000443945.2 LRCH1-003

Summary