Transcript: ENST00000258415.4 CYP27A1-001

Description

cytochrome P450, family 27, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:2605]

Gene Synonyms

CP27, CTX, CYP27

Location

About this transcript

This transcript has 9 exons, is annotated with 22 domains and features, is associated with 13917 variant alleles and maps to 418 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258415.4	CYP27A1-001	2286	531aa	ENSP00000258415.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2423	C9J1K5 Q02318	NM_000784.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411688.1	CYP27A1-005	799	221aa	ENSP00000392671.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J1K5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000445971.1	CYP27A1-004	903	115aa	ENSP00000404945.1	Nonsense mediated decay		F8WD90	-	-
ENST00000494263.1	CYP27A1-002	2566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466602.1	CYP27A1-003	1210	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,286 bps, Translation length: 531 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q02318

CCDS

This transcript is a member of the Human CCDS set: CCDS2423

Version

ENST00000258415.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000109734 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.