Transcript: ENST00000379888.4 RBM17-003

Description

RNA binding motif protein 17 [Source:HGNC Symbol;Acc:16944]

Gene Synonyms

MGC14439, SPF45

Location

Chromosome 10: 6,130,950-6,158,843 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 13 domains and features, is associated with 13105 variant alleles and maps to 666 oligo probes.

Gene

This transcript is a product of gene ENSG00000134453.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000446108.1	RBM17-201	3751	401aa	ENSP00000388638.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7077	Q5W009 Q5W011 Q96I25	NM_001145547.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379888.4	RBM17-003	2755	401aa	ENSP00000369218.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7077	Q5W009 Q5W011 Q96I25	NM_032905.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437845.2	RBM17-005	833	240aa	ENSP00000395448.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5W012	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000432931.1	RBM17-007	805	221aa	ENSP00000408214.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5W010	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000418631.1	RBM17-006	792	212aa	ENSP00000402303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5W011	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447032.1	RBM17-009	676	225aa	ENSP00000406024.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000476706.1	RBM17-011	927	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481147.1	RBM17-010	611	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496762.1	RBM17-004	1585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465906.1	RBM17-002	914	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467080.1	RBM17-001	837	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467214.1	RBM17-008	389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,755 bps, Translation length: 401 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96I25

CCDS

This transcript is a member of the Human CCDS set: CCDS7077

Version

ENST00000379888.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000046635 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000379888.4 RBM17-003

Summary