Transcript: ENST00000548236.1 SLC38A2-008

Description

solute carrier family 38, member 2 [Source:HGNC Symbol;Acc:13448]

Gene Synonyms

ATA2, KIAA1382, PRO1068, SAT2, SNAT2

Location

Chromosome 12: 46,756,108-46,758,615 reverse strand.

About this transcript

This transcript has 7 exons, is associated with 1339 variant alleles and maps to 154 oligo probes.

Gene

This transcript is a product of gene ENSG00000134294.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000256689.5	SLC38A2-001	4888	506aa	ENSP00000256689.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8749	Q96QD8	NM_018976.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551374.1	SLC38A2-003	2802	344aa	ENSP00000450406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VQW8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549258.1	SLC38A2-002	4384	88aa	ENSP00000449695.1	Nonsense mediated decay		F8VUY8	-	-
ENST00000547252.1	SLC38A2-006	847	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548111.1	SLC38A2-012	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548870.1	SLC38A2-007	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551405.1	SLC38A2-005	526	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548236.1	SLC38A2-008	865	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553252.1	SLC38A2-004	846	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546520.1	SLC38A2-010	601	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000548785.1	SLC38A2-011	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552414.1	SLC38A2-009	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552703.1	SLC38A2-013	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 865 bps,

Version

ENST00000548236.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000404233 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000548236.1 SLC38A2-008

Summary