Transcript: ENST00000400777.3 CASP9-006

Description

caspase 9, apoptosis-related cysteine peptidase [Source:HGNC Symbol;Acc:1511]

Gene Synonyms

APAF-3, APAF3, ICE-LAP6, MCH6, PPP1R56

Location

Chromosome 1: 15,818,861-15,850,687 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 7 domains and features, is associated with 14086 variant alleles and maps to 630 oligo probes.

Gene

This transcript is a product of gene ENSG00000132906.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000546424.1	CASP9-009	4463	421aa	ENSP00000449584.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVS7 Q59GG2 Q5JRU2	NM_001229.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000333868.5	CASP9-001	2019	416aa	ENSP00000330237.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS158	P55211 Q5JRU2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000348549.5	CASP9-002	1621	266aa	ENSP00000255256.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59995	P55211	NM_001278054.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375890.4	CASP9-008	1351	333aa	ENSP00000365051.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS159	P55211 Q5JRU2	NM_032996.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447522.1	CASP9-003	954	266aa	ENSP00000396540.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JRU2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000440484.1	CASP9-005	781	254aa	ENSP00000411304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JRU8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000424908.1	CASP9-007	740	198aa	ENSP00000408691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000400777.3	CASP9-006	1878	152aa	ENSP00000383588.3	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000474305.2	CASP9-011	1111	95aa	ENSP00000449216.1	Nonsense mediated decay		F8VWA5	-	-
ENST00000469637.1	CASP9-004	725	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546969.1	CASP9-012	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 4, Transcript length: 1,878 bps, Translation length: 152 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000400777.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000006443 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000400777.3 CASP9-006

Summary